Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 AC092474.2-201ENST00000424288 719 ntBASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 SPCS2P4-201ENST00000436160 681 ntBASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 RARRES2P8-201ENST00000566335 367 ntBASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 AL355385.1-201ENST00000606123 409 ntBASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 GGT4P-201ENST00000623672 1708 ntBASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4CQ96CF2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 PCGF3-213ENST00000620529 1899 ntBASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 ALOX12P2-203ENST00000570921 1945 ntBASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4CQ96CF2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AL627223.1-201ENST00000416693 442 ntBASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 HMGN1P19-201ENST00000436976 333 ntBASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AC069335.1-201ENST00000489972 472 ntBASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 AC026691.1-201ENST00000602502 2017 ntBASIC19.49■□□□□ 0.71
CHMP4CQ96CF2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms