Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 AC091812.3-201ENST00000621362 345 ntBASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 WIZP1-201ENST00000531444 2299 ntBASIC19.21■□□□□ 0.67
SMC1BQ8NDV3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SMC1BQ8NDV3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC005332.8-201ENST00000622750 2735 ntBASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AL589702.1-201ENST00000641229 1509 ntBASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 AC104581.1-202ENST00000635932 2618 ntBASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC1BQ8NDV3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 INTS4P2-202ENST00000614726 2019 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 RPL13AP25-201ENST00000484130 612 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 CLUHP6-201ENST00000580789 941 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 AC104982.3-201ENST00000581995 514 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 EEF1DP1-201ENST00000585891 896 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 NDUFV2P1-201ENST00000596415 907 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 HLA-C-210ENST00000640219 976 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms