Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 AC022188.1-201ENST00000620960 1664 ntBASIC14.52□□□□□ -0.09
SKA3Q8IX90 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 AL662844.4-201ENST00000606367 2838 ntBASIC14.51□□□□□ -0.09
SKA3Q8IX90 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 YBX2P1-201ENST00000394192 760 ntBASIC14.51□□□□□ -0.09
SKA3Q8IX90 FAM58CP-201ENST00000435741 640 ntBASIC14.51□□□□□ -0.09
SKA3Q8IX90 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 AL161645.1-201ENST00000622716 1255 ntBASIC14.51□□□□□ -0.09
SKA3Q8IX90 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SKA3Q8IX90 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SKA3Q8IX90 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 AC016027.1-202ENST00000607927 1699 ntBASIC14.5□□□□□ -0.09
SKA3Q8IX90 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 COX10-202ENST00000429152 875 ntTSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 AC099522.2-201ENST00000607001 744 ntBASIC14.5□□□□□ -0.09
SKA3Q8IX90 AL078644.1-201ENST00000609881 752 ntBASIC14.5□□□□□ -0.09
SKA3Q8IX90 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
SKA3Q8IX90 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SKA3Q8IX90 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms