Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC60Q8IWA6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC60Q8IWA6 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC60Q8IWA6 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC60Q8IWA6 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AC004840.1-201ENST00000636359 365 ntBASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AC079328.2-201ENST00000561241 3354 ntBASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCDC60Q8IWA6 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 CYP4F24P-201ENST00000586049 1580 ntBASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 COX20P2-201ENST00000452636 358 ntBASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC60Q8IWA6 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 RN7SL618P-201ENST00000477850 296 ntBASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms