Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
SOX3P41225 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SOX3P41225 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.43■□□□□ 0.06
SOX3P41225 AC092183.1-201ENST00000469884 875 ntBASIC15.43■□□□□ 0.06
SOX3P41225 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.43■□□□□ 0.06
SOX3P41225 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.43■□□□□ 0.06
SOX3P41225 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
SOX3P41225 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.43■□□□□ 0.06
SOX3P41225 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SOX3P41225 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SOX3P41225 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
SOX3P41225 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
SOX3P41225 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SOX3P41225 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 AL355306.1-201ENST00000415580 579 ntBASIC15.42■□□□□ 0.06
SOX3P41225 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 CNN2P11-201ENST00000429351 262 ntBASIC15.42■□□□□ 0.06
SOX3P41225 ADH5P3-201ENST00000433842 1137 ntBASIC15.42■□□□□ 0.06
SOX3P41225 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.42■□□□□ 0.06
SOX3P41225 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.42■□□□□ 0.06
SOX3P41225 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.42■□□□□ 0.06
SOX3P41225 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SOX3P41225 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.42■□□□□ 0.06
SOX3P41225 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.42■□□□□ 0.06
SOX3P41225 AC092850.2-201ENST00000623821 2697 ntBASIC15.42■□□□□ 0.06
SOX3P41225 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SOX3P41225 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SOX3P41225 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
SOX3P41225 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
SOX3P41225 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SOX3P41225 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SOX3P41225 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms