Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 AL109954.1-202ENST00000564051 2148 ntBASIC15.67■□□□□ 0.1
MSX2P35548 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.66■□□□□ 0.1
MSX2P35548 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.66■□□□□ 0.1
MSX2P35548 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 MINOS1P3-201ENST00000457048 203 ntBASIC15.66■□□□□ 0.1
MSX2P35548 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.66■□□□□ 0.1
MSX2P35548 AL353135.1-201ENST00000606729 504 ntBASIC15.66■□□□□ 0.1
MSX2P35548 AC012306.2-201ENST00000609350 630 ntBASIC15.66■□□□□ 0.1
MSX2P35548 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.66■□□□□ 0.1
MSX2P35548 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
MSX2P35548 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX2P35548 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX2P35548 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX2P35548 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 AC233702.3-201ENST00000578656 1387 ntBASIC15.65■□□□□ 0.1
MSX2P35548 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 AL161772.1-201ENST00000610494 4412 ntBASIC15.65■□□□□ 0.1
MSX2P35548 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
MSX2P35548 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.65■□□□□ 0.1
MSX2P35548 AC064862.7-201ENST00000604520 867 ntBASIC15.65■□□□□ 0.1
MSX2P35548 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.65■□□□□ 0.1
MSX2P35548 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 SIGLEC16-201ENST00000599858 1437 ntBASIC15.65■□□□□ 0.1
MSX2P35548 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX2P35548 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX2P35548 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX2P35548 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms