Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC7A15P-201ENST00000424028 1363 ntBASIC21.29■■□□□ 1
COL3A1P02461 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC21.29■■□□□ 1
COL3A1P02461 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC21.29■■□□□ 1
COL3A1P02461 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.29■■□□□ 1
COL3A1P02461 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 AC011477.6-201ENST00000604980 1927 ntBASIC21.29■■□□□ 1
COL3A1P02461 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL3A1P02461 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC21.28■■□□□ 1
COL3A1P02461 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.28■■□□□ 1
COL3A1P02461 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.28■■□□□ 1
COL3A1P02461 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC21.28■■□□□ 1
COL3A1P02461 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC21.28■■□□□ 1
COL3A1P02461 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 AC018892.3-201ENST00000623986 2499 ntBASIC21.28■■□□□ 1
COL3A1P02461 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 PCDH8P1-201ENST00000428983 2773 ntBASIC21.28■■□□□ 1
COL3A1P02461 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC21.28■■□□□ 1
COL3A1P02461 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC21.28■■□□□ 1
COL3A1P02461 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL3A1P02461 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.27■■□□□ 1
COL3A1P02461 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.27■■□□□ 1
COL3A1P02461 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
COL3A1P02461 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.27■■□□□ 1
COL3A1P02461 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.27■■□□□ 1
COL3A1P02461 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC21.27■■□□□ 1
COL3A1P02461 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.27■■□□□ 1
COL3A1P02461 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
COL3A1P02461 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
COL3A1P02461 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL3A1P02461 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC21.27■□□□□ 0.99
COL3A1P02461 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL3A1P02461 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC21.27■□□□□ 0.99
COL3A1P02461 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
COL3A1P02461 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL3A1P02461 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.26■□□□□ 0.99
COL3A1P02461 LINC02447-202ENST00000501888 2146 ntBASIC21.26■□□□□ 0.99
COL3A1P02461 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
COL3A1P02461 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
COL3A1P02461 AL450472.2-201ENST00000603663 1156 ntBASIC21.26■□□□□ 0.99
COL3A1P02461 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
COL3A1P02461 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.26■□□□□ 0.99
COL3A1P02461 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 BANP-204ENST00000393208 2283 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC21.26■□□□□ 0.99
COL3A1P02461 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 SPDYE19P-201ENST00000338590 713 ntBASIC21.26■□□□□ 0.99
COL3A1P02461 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 AC015922.1-201ENST00000421102 1152 ntBASIC21.26■□□□□ 0.99
COL3A1P02461 RHOA-206ENST00000454011 889 ntTSL 2 BASIC21.26■□□□□ 0.99
COL3A1P02461 AP005018.1-201ENST00000525475 301 ntBASIC21.26■□□□□ 0.99
COL3A1P02461 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC21.26■□□□□ 0.99
COL3A1P02461 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC21.26■□□□□ 0.99
COL3A1P02461 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.26■□□□□ 0.99
COL3A1P02461 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.26■□□□□ 0.99
COL3A1P02461 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL3A1P02461 AC099568.2-201ENST00000609194 695 ntBASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms