Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
SSSCA1O60232 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SSSCA1O60232 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.4□□□□□ -0.26
SSSCA1O60232 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.4□□□□□ -0.26
SSSCA1O60232 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.4□□□□□ -0.26
SSSCA1O60232 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SSSCA1O60232 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SSSCA1O60232 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.4□□□□□ -0.26
SSSCA1O60232 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.4□□□□□ -0.26
SSSCA1O60232 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.4□□□□□ -0.26
SSSCA1O60232 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.4□□□□□ -0.26
SSSCA1O60232 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SSSCA1O60232 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 SSR4P1-203ENST00000599569 2260 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 AC136621.1-201ENST00000624017 2304 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 AL009178.2-201ENST00000597278 2719 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 MIR648-201ENST00000385046 94 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 AC005363.2-201ENST00000618631 242 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 TMEM191A-211ENST00000637163 1067 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.39□□□□□ -0.27
SSSCA1O60232 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SSSCA1O60232 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.39□□□□□ -0.27
SSSCA1O60232 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SSSCA1O60232 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.39□□□□□ -0.27
SSSCA1O60232 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.38□□□□□ -0.27
SSSCA1O60232 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.38□□□□□ -0.27
SSSCA1O60232 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SSSCA1O60232 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.38□□□□□ -0.27
SSSCA1O60232 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
SSSCA1O60232 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SSSCA1O60232 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms