Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SGCEO43556 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.55□□□□□ -0.08
SGCEO43556 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.55□□□□□ -0.08
SGCEO43556 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SGCEO43556 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SGCEO43556 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SGCEO43556 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SGCEO43556 PCGF3-213ENST00000620529 1899 ntBASIC14.55□□□□□ -0.08
SGCEO43556 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SGCEO43556 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SGCEO43556 RNU1-129P-201ENST00000384064 167 ntBASIC14.54□□□□□ -0.08
SGCEO43556 AC026396.1-201ENST00000419388 421 ntBASIC14.54□□□□□ -0.08
SGCEO43556 RHOQP3-201ENST00000437982 621 ntBASIC14.54□□□□□ -0.08
SGCEO43556 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.54□□□□□ -0.08
SGCEO43556 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.54□□□□□ -0.08
SGCEO43556 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.54□□□□□ -0.08
SGCEO43556 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.54□□□□□ -0.08
SGCEO43556 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.54□□□□□ -0.08
SGCEO43556 U1.21-201ENST00000580816 167 ntBASIC14.54□□□□□ -0.08
SGCEO43556 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.54□□□□□ -0.08
SGCEO43556 AC023141.13-201ENST00000604991 943 ntBASIC14.54□□□□□ -0.08
SGCEO43556 AL031055.1-201ENST00000606362 631 ntBASIC14.54□□□□□ -0.08
SGCEO43556 AC064836.3-201ENST00000607928 673 ntBASIC14.54□□□□□ -0.08
SGCEO43556 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.54□□□□□ -0.08
SGCEO43556 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 ZNF259P1-201ENST00000407656 1365 ntBASIC14.54□□□□□ -0.08
SGCEO43556 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SGCEO43556 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.54□□□□□ -0.08
SGCEO43556 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SGCEO43556 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.53□□□□□ -0.08
SGCEO43556 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.53□□□□□ -0.08
SGCEO43556 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.53□□□□□ -0.08
SGCEO43556 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SGCEO43556 AC021097.1-201ENST00000607902 574 ntBASIC14.53□□□□□ -0.08
SGCEO43556 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 AC120114.3-201ENST00000611923 658 ntBASIC14.53□□□□□ -0.08
SGCEO43556 AC020765.3-201ENST00000613051 740 ntBASIC14.53□□□□□ -0.08
SGCEO43556 BX640515.1-201ENST00000617215 977 ntBASIC14.53□□□□□ -0.08
SGCEO43556 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 AC092364.2-201ENST00000596710 2692 ntBASIC14.53□□□□□ -0.08
SGCEO43556 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SGCEO43556 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SGCEO43556 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.53□□□□□ -0.08
SGCEO43556 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.52□□□□□ -0.08
SGCEO43556 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.52□□□□□ -0.08
SGCEO43556 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.52□□□□□ -0.08
SGCEO43556 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SGCEO43556 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SGCEO43556 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms