Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AC087641.1-201ENST00000557561 1021 ntBASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AP001269.4-201ENST00000609611 512 ntBASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 AC012615.1-201ENST00000565797 1299 ntBASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 AL139288.1-201ENST00000623748 933 ntBASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC28BQ9BUN5 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CICP4-201ENST00000447359 2812 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 PRAL-201ENST00000624952 3286 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 RCN1P1-201ENST00000400413 996 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 SLC25A6P2-201ENST00000497974 877 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 AC106795.1-205ENST00000512851 1056 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 AP000867.3-201ENST00000524675 377 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 RN7SL850P-201ENST00000579959 291 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 NKAPP1-205ENST00000585790 367 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 AC099336.1-202ENST00000602961 463 ntBASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC28BQ9BUN5 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC28BQ9BUN5 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.96■□□□□ 0.14
CCDC28BQ9BUN5 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
CCDC28BQ9BUN5 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
CCDC28BQ9BUN5 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 NUS1P2-201ENST00000417358 873 ntBASIC15.95■□□□□ 0.14
CCDC28BQ9BUN5 HCG4-201ENST00000418983 998 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms