Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 AC069120.2-201ENST00000524091 540 ntBASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 AL390955.2-201ENST00000603032 514 ntBASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 RN7SL828P-201ENST00000607615 303 ntBASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ECHDC3Q96DC8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 OR6D1P-203ENST00000641209 4860 ntBASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 AL355385.1-201ENST00000606123 409 ntBASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 AC026979.3-201ENST00000607315 403 ntBASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
ECHDC3Q96DC8 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 MIR943-201ENST00000401286 94 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC092580.3-201ENST00000430932 139 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC055876.3-201ENST00000431496 288 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 HLA-V-204ENST00000476601 1289 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC005498.2-205ENST00000593218 784 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 AC138649.4-201ENST00000612222 287 ntBASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ECHDC3Q96DC8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms