Protein–RNA interactions for Protein: Q92854

SEMA4D, Semaphorin-4D, humanhuman

Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4DQ92854 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA4DQ92854 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA4DQ92854 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA4DQ92854 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SEMA4DQ92854 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.58■□□□□ 0.4
SEMA4DQ92854 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.58■□□□□ 0.4
SEMA4DQ92854 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SEMA4DQ92854 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.57■□□□□ 0.4
SEMA4DQ92854 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 AC098859.1-201ENST00000502915 1238 ntBASIC17.57■□□□□ 0.4
SEMA4DQ92854 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
SEMA4DQ92854 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SEMA4DQ92854 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 FAM58DP-201ENST00000428076 619 ntBASIC17.56■□□□□ 0.4
SEMA4DQ92854 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 SLC25A39P2-201ENST00000537614 270 ntBASIC17.56■□□□□ 0.4
SEMA4DQ92854 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 AC084121.4-201ENST00000641598 221 ntBASIC17.56■□□□□ 0.4
SEMA4DQ92854 AF228730.8-201ENST00000642140 221 ntBASIC17.56■□□□□ 0.4
SEMA4DQ92854 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.56■□□□□ 0.4
SEMA4DQ92854 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.56■□□□□ 0.4
SEMA4DQ92854 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SEMA4DQ92854 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA4DQ92854 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA4DQ92854 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA4DQ92854 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA4DQ92854 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.55■□□□□ 0.4
SEMA4DQ92854 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SEMA4DQ92854 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms