Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.86■□□□□ 0.13
FOXA1P55317 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.86■□□□□ 0.13
FOXA1P55317 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
FOXA1P55317 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA1P55317 PMS2P4-201ENST00000412466 1052 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 VN2R19P-201ENST00000442399 1052 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 AC009947.1-201ENST00000444350 727 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 RNA5SP419-201ENST00000515908 135 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 UNC93B6-202ENST00000528242 690 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.85■□□□□ 0.13
FOXA1P55317 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.85■□□□□ 0.13
FOXA1P55317 AL773604.1-201ENST00000617417 272 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 AC116407.3-201ENST00000623905 1129 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 AL645728.2-201ENST00000641974 660 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 AC016027.1-202ENST00000607927 1699 ntBASIC15.85■□□□□ 0.13
FOXA1P55317 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.85■□□□□ 0.13
FOXA1P55317 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
FOXA1P55317 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
FOXA1P55317 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.85■□□□□ 0.13
FOXA1P55317 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA1P55317 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA1P55317 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA1P55317 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.84■□□□□ 0.13
FOXA1P55317 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.84■□□□□ 0.13
FOXA1P55317 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA1P55317 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
FOXA1P55317 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.84■□□□□ 0.13
FOXA1P55317 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA1P55317 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.84■□□□□ 0.13
FOXA1P55317 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
FOXA1P55317 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms