Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.06■□□□□ 0.32
CDH6P55285 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.06■□□□□ 0.32
CDH6P55285 KRT18P58-201ENST00000527480 1120 ntBASIC17.06■□□□□ 0.32
CDH6P55285 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.06■□□□□ 0.32
CDH6P55285 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.06■□□□□ 0.32
CDH6P55285 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.06■□□□□ 0.32
CDH6P55285 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CDH6P55285 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CDH6P55285 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDH6P55285 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 U82695.1-201ENST00000635752 1889 ntBASIC17.05■□□□□ 0.32
CDH6P55285 AC024909.3-201ENST00000611513 2257 ntBASIC17.05■□□□□ 0.32
CDH6P55285 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 MIR574-201ENST00000385209 96 ntBASIC17.05■□□□□ 0.32
CDH6P55285 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
CDH6P55285 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.05■□□□□ 0.32
CDH6P55285 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.05■□□□□ 0.32
CDH6P55285 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.05■□□□□ 0.32
CDH6P55285 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.05■□□□□ 0.32
CDH6P55285 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDH6P55285 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.04■□□□□ 0.32
CDH6P55285 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.04■□□□□ 0.32
CDH6P55285 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.04■□□□□ 0.32
CDH6P55285 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.04■□□□□ 0.32
CDH6P55285 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.04■□□□□ 0.32
CDH6P55285 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.04■□□□□ 0.32
CDH6P55285 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CDH6P55285 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDH6P55285 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.04■□□□□ 0.32
CDH6P55285 AP002472.1-201ENST00000577490 586 ntBASIC17.04■□□□□ 0.32
CDH6P55285 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CDH6P55285 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDH6P55285 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 AL603832.2-201ENST00000566195 2125 ntBASIC17.03■□□□□ 0.32
CDH6P55285 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.03■□□□□ 0.32
CDH6P55285 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.03■□□□□ 0.32
CDH6P55285 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
CDH6P55285 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDH6P55285 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms