Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
KCNIP3Q9Y2W7 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 AL137013.1-201ENST00000432946 1228 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 KRT18P38-201ENST00000449496 1282 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 TERC-201ENST00000602385 541 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 KRT8P39-201ENST00000396270 1433 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 CDC14C-201ENST00000428251 1719 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 LINC02447-202ENST00000501888 2146 ntBASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.78□□□□□ -0.2
KCNIP3Q9Y2W7 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.2
KCNIP3Q9Y2W7 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 TOP3BP1-201ENST00000420768 1380 ntBASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 AC243591.1-201ENST00000452967 1364 ntBASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 AC092647.4-201ENST00000457211 535 ntBASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 PMPCAP1-201ENST00000508114 1576 ntBASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC13.77□□□□□ -0.21
KCNIP3Q9Y2W7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms