Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 AC069224.1-201ENST00000566372 1715 ntBASIC25.3■■□□□ 1.64
VPS8Q8N3P4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS8Q8N3P4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 FO393414.2-201ENST00000405153 598 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL035633.1-201ENST00000406139 838 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC074338.1-201ENST00000416825 156 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 POLD4-211ENST00000539074 714 ntTSL 3 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 LINC02560-201ENST00000596379 459 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 RNA5-8SN1-201ENST00000610460 153 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 RNA5-8SN5-202ENST00000612463 153 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC009118.2-201ENST00000613275 655 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 RNA5-8SN4-201ENST00000613359 153 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 5S_rRNA.22-201ENST00000614916 106 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 RNA5-8SN5-201ENST00000619471 153 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL109936.8-201ENST00000641772 604 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 Z97205.2-201ENST00000564697 1639 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS8Q8N3P4 AC074044.1-201ENST00000609673 707 ntBASIC25.29■■□□□ 1.64
VPS8Q8N3P4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 AC092337.1-201ENST00000568699 1129 ntBASIC25.28■■□□□ 1.64
VPS8Q8N3P4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS8Q8N3P4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC25.27■■□□□ 1.64
VPS8Q8N3P4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms