Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AC106872.11-201ENST00000605838 421 ntBASIC11.21□□□□□ -0.61
CSMD3Q7Z407 MIR6069-201ENST00000620069 79 ntBASIC11.21□□□□□ -0.61
CSMD3Q7Z407 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CSMD3Q7Z407 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 MGST3-203ENST00000367885 680 ntTSL 2 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 BTBD6P1-201ENST00000412176 1267 ntBASIC11.21□□□□□ -0.62
CSMD3Q7Z407 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.21□□□□□ -0.62
CSMD3Q7Z407 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 KRT8P37-201ENST00000451609 1420 ntBASIC11.21□□□□□ -0.62
CSMD3Q7Z407 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
CSMD3Q7Z407 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 EEF1DP4-201ENST00000446006 880 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 TMEM198B-204ENST00000484016 896 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC010328.2-201ENST00000597698 1111 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AL118558.3-201ENST00000607414 1079 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC009053.2-201ENST00000563701 2365 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC079328.1-201ENST00000560358 952 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC008687.7-202ENST00000637404 953 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 GPAA1P2-202ENST00000606848 1787 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 PFN1P12-201ENST00000455938 534 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 MIR3619-201ENST00000579667 83 ntBASIC11.2□□□□□ -0.62
CSMD3Q7Z407 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
CSMD3Q7Z407 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 INTS4P2-202ENST00000614726 2019 ntBASIC11.19□□□□□ -0.62
CSMD3Q7Z407 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.19□□□□□ -0.62
CSMD3Q7Z407 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms