Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC19.71■□□□□ 0.75
COL4A1P02462 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A1P02462 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL4A1P02462 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL4A1P02462 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A1P02462 MSTO2P-201ENST00000314835 1709 ntBASIC19.71■□□□□ 0.75
COL4A1P02462 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
COL4A1P02462 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL4A1P02462 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 FXR1-221ENST00000491674 365 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A1P02462 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A1P02462 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A1P02462 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A1P02462 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A1P02462 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A1P02462 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL4A1P02462 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 KRT223P-202ENST00000449164 1292 ntBASIC19.7■□□□□ 0.74
COL4A1P02462 POU5F1P6-201ENST00000466990 990 ntBASIC19.7■□□□□ 0.74
COL4A1P02462 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A1P02462 MFF-223ENST00000524634 647 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A1P02462 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A1P02462 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.7■□□□□ 0.74
COL4A1P02462 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A1P02462 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A1P02462 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A1P02462 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A1P02462 ME2P1-201ENST00000426028 1970 ntBASIC19.7■□□□□ 0.74
COL4A1P02462 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.69■□□□□ 0.74
COL4A1P02462 RN7SL399P-201ENST00000471648 279 ntBASIC19.69■□□□□ 0.74
COL4A1P02462 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.69■□□□□ 0.74
COL4A1P02462 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A1P02462 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A1P02462 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL4A1P02462 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL4A1P02462 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL4A1P02462 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A1P02462 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A1P02462 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 AC004987.2-201ENST00000395959 1148 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 COX11-210ENST00000639671 696 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 AL033527.5-201ENST00000641382 801 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 REXO1L6P-201ENST00000603433 1515 ntBASIC19.68■□□□□ 0.74
COL4A1P02462 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A1P02462 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A1P02462 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A1P02462 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms