Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 AL139011.1-202ENST00000642063 584 ntBASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.96□□□□□ -0.01
NPIPA2E9PIF3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.96□□□□□ -0.02
NPIPA2E9PIF3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 BASP1P1-201ENST00000430708 665 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AC055876.3-201ENST00000431496 288 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 HLA-J-202ENST00000469281 1241 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 IGHV3-42-201ENST00000520410 361 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AC138649.4-201ENST00000612222 287 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AC084121.4-201ENST00000641598 221 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AF228730.8-201ENST00000642140 221 ntBASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NPIPA2E9PIF3 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NPIPA2E9PIF3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms