Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NKX3-1Q99801 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 AC026396.1-201ENST00000419388 421 ntBASIC14.39□□□□□ -0.11
NKX3-1Q99801 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NKX3-1Q99801 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
NKX3-1Q99801 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 TOP3BP1-201ENST00000420768 1380 ntBASIC14.38□□□□□ -0.11
NKX3-1Q99801 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 KRT18P31-201ENST00000506277 1292 ntBASIC14.38□□□□□ -0.11
NKX3-1Q99801 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 KLK8-205ENST00000593490 267 ntTSL 3 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 NCF1C-201ENST00000438382 1427 ntBASIC14.38□□□□□ -0.11
NKX3-1Q99801 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.38□□□□□ -0.11
NKX3-1Q99801 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
NKX3-1Q99801 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.37□□□□□ -0.11
NKX3-1Q99801 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
NKX3-1Q99801 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NKX3-1Q99801 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms