Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 MIR600HG-201ENST00000449175 5984 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 FAM197Y8-203ENST00000450145 560 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC073648.2-201ENST00000510116 352 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AF238378.1-201ENST00000526806 358 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 MTDHP3-201ENST00000594186 672 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC104692.2-201ENST00000603054 253 ntBASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
DEPDC4Q8N2C3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 C8orf49-201ENST00000525043 1968 ntBASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 AKR1C7P-201ENST00000305623 895 ntBASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ABCD1P5-201ENST00000445663 754 ntBASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 AC079776.4-201ENST00000511039 504 ntBASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 DUX4L17-201ENST00000557360 1267 ntBASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
DEPDC4Q8N2C3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
DEPDC4Q8N2C3 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms