Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 POU5F1P6-201ENST00000466990 990 ntBASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AC010331.1-201ENST00000611423 582 ntBASIC14.76□□□□□ -0.05
CCDC58Q4VC31 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AL590326.2-201ENST00000625139 305 ntBASIC14.76□□□□□ -0.05
CCDC58Q4VC31 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SNX33P1-201ENST00000592116 1762 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 AC007686.3-201ENST00000619017 3487 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 TLE1-202ENST00000376484 666 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 RCN1P2-201ENST00000398357 915 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 BNIP3P18-201ENST00000593976 575 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 AC114341.1-201ENST00000618070 349 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 AL671710.1-201ENST00000610245 2349 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 AL512652.2-201ENST00000625156 1716 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 KRT8P39-201ENST00000396270 1433 ntBASIC14.75□□□□□ -0.05
CCDC58Q4VC31 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC58Q4VC31 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 PRAL-201ENST00000624952 3286 ntBASIC14.74□□□□□ -0.05
CCDC58Q4VC31 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC58Q4VC31 AC079776.2-201ENST00000641154 1609 ntBASIC14.74□□□□□ -0.05
CCDC58Q4VC31 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 277.8 ms