Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC144BQ3MJ40 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 AC124947.2-201ENST00000547118 1133 ntBASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 AC084121.4-201ENST00000641598 221 ntBASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 AF228730.8-201ENST00000642140 221 ntBASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC144BQ3MJ40 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 SPDYE14P-201ENST00000442619 822 ntBASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 FO538757.1-201ENST00000623083 1397 ntBASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC144BQ3MJ40 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 WASH6P-202ENST00000359512 1437 ntBASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 HCG4-201ENST00000418983 998 ntBASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.03■□□□□ 0.64
CCDC144BQ3MJ40 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms