Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH13P55290 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH13P55290 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CDH13P55290 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 KRT18P67-201ENST00000432816 1264 ntBASIC16.1■□□□□ 0.17
CDH13P55290 AF186996.4-201ENST00000467186 377 ntBASIC16.1■□□□□ 0.17
CDH13P55290 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH13P55290 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.1■□□□□ 0.17
CDH13P55290 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 ACTL9-202ENST00000612068 1252 ntBASIC16.1■□□□□ 0.17
CDH13P55290 PGM5P2-202ENST00000637225 1043 ntBASIC16.1■□□□□ 0.17
CDH13P55290 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
CDH13P55290 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH13P55290 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CDH13P55290 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.09■□□□□ 0.17
CDH13P55290 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH13P55290 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CDH13P55290 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CDH13P55290 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 AC005622.1-201ENST00000636801 1703 ntBASIC16.09■□□□□ 0.17
CDH13P55290 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CDH13P55290 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH13P55290 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 AC079781.3-201ENST00000449110 356 ntBASIC16.09■□□□□ 0.17
CDH13P55290 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH13P55290 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH13P55290 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CDH13P55290 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH13P55290 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH13P55290 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.08■□□□□ 0.17
CDH13P55290 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CDH13P55290 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.08■□□□□ 0.17
CDH13P55290 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.08■□□□□ 0.17
CDH13P55290 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH13P55290 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CDH13P55290 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
CDH13P55290 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CDH13P55290 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH13P55290 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CDH13P55290 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH13P55290 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH13P55290 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms