Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HTTP42858 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.09■□□□□ 0.49
HTTP42858 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HTTP42858 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HTTP42858 EEF1DP4-201ENST00000446006 880 ntBASIC18.09■□□□□ 0.49
HTTP42858 AC120045.2-201ENST00000567334 178 ntBASIC18.09■□□□□ 0.49
HTTP42858 AP001505.2-201ENST00000616815 443 ntBASIC18.09■□□□□ 0.49
HTTP42858 MIR7845-201ENST00000618396 99 ntBASIC18.09■□□□□ 0.49
HTTP42858 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HTTP42858 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HTTP42858 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HTTP42858 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HTTP42858 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.08■□□□□ 0.49
HTTP42858 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
HTTP42858 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HTTP42858 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
HTTP42858 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HTTP42858 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.08■□□□□ 0.49
HTTP42858 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.08■□□□□ 0.49
HTTP42858 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC18.08■□□□□ 0.49
HTTP42858 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
HTTP42858 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
HTTP42858 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.08■□□□□ 0.48
HTTP42858 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
HTTP42858 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 FNTAP2-201ENST00000430308 634 ntBASIC18.08■□□□□ 0.48
HTTP42858 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.08■□□□□ 0.48
HTTP42858 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.08■□□□□ 0.48
HTTP42858 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.08■□□□□ 0.48
HTTP42858 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.08■□□□□ 0.48
HTTP42858 KRT8P39-201ENST00000396270 1433 ntBASIC18.08■□□□□ 0.48
HTTP42858 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
HTTP42858 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HTTP42858 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.08■□□□□ 0.48
HTTP42858 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.08■□□□□ 0.48
HTTP42858 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HTTP42858 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HTTP42858 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 AC138951.2-201ENST00000623455 1161 ntBASIC18.07■□□□□ 0.48
HTTP42858 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 GPAA1P2-202ENST00000606848 1787 ntBASIC18.07■□□□□ 0.48
HTTP42858 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.07■□□□□ 0.48
HTTP42858 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC18.07■□□□□ 0.48
HTTP42858 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
HTTP42858 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HTTP42858 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HTTP42858 NEFHP1-201ENST00000412845 2629 ntBASIC18.06■□□□□ 0.48
HTTP42858 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.06■□□□□ 0.48
HTTP42858 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HTTP42858 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
HTTP42858 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
HTTP42858 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 AC067852.2-201ENST00000590513 2313 ntBASIC18.06■□□□□ 0.48
HTTP42858 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.06■□□□□ 0.48
HTTP42858 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 AL603756.1-201ENST00000606511 2163 ntBASIC18.06■□□□□ 0.48
HTTP42858 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HTTP42858 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.06■□□□□ 0.48
HTTP42858 AC139713.2-201ENST00000641328 2723 ntBASIC18.06■□□□□ 0.48
HTTP42858 AC009053.2-201ENST00000563701 2365 ntBASIC18.05■□□□□ 0.48
HTTP42858 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HTTP42858 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.05■□□□□ 0.48
HTTP42858 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.05■□□□□ 0.48
HTTP42858 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
HTTP42858 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.05■□□□□ 0.48
HTTP42858 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC18.05■□□□□ 0.48
HTTP42858 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HTTP42858 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.05■□□□□ 0.48
HTTP42858 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms