Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX3P41225 AC140658.5-201ENST00000438532 169 ntBASIC15.5■□□□□ 0.07
SOX3P41225 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 AC112191.1-201ENST00000523689 701 ntBASIC15.5■□□□□ 0.07
SOX3P41225 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 AC092902.6-201ENST00000641783 218 ntBASIC15.5■□□□□ 0.07
SOX3P41225 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.5■□□□□ 0.07
SOX3P41225 AC131009.4-201ENST00000624048 1740 ntBASIC15.5■□□□□ 0.07
SOX3P41225 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SOX3P41225 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX3P41225 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX3P41225 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
SOX3P41225 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX3P41225 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX3P41225 AC087641.1-201ENST00000557561 1021 ntBASIC15.49■□□□□ 0.07
SOX3P41225 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.49■□□□□ 0.07
SOX3P41225 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.49■□□□□ 0.07
SOX3P41225 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.49■□□□□ 0.07
SOX3P41225 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SOX3P41225 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX3P41225 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX3P41225 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 AC002056.1-201ENST00000395613 760 ntBASIC15.48■□□□□ 0.07
SOX3P41225 DNAJB3-202ENST00000449667 1266 ntBASIC15.48■□□□□ 0.07
SOX3P41225 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms