Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 SNX33P1-201ENST00000592116 1762 ntBASIC15.06■□□□□ 0
RFC3P40938 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.06■□□□□ 0
RFC3P40938 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
RFC3P40938 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.06■□□□□ 0
RFC3P40938 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
RFC3P40938 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 MIR346-201ENST00000362234 95 ntBASIC15.06■□□□□ 0
RFC3P40938 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.06■□□□□ 0
RFC3P40938 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
RFC3P40938 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.06■□□□□ 0
RFC3P40938 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.06■□□□□ 0
RFC3P40938 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.06■□□□□ 0
RFC3P40938 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.06■□□□□ 0
RFC3P40938 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.06■□□□□ 0
RFC3P40938 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.06■□□□□ 0
RFC3P40938 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 AC015911.4-201ENST00000588022 1070 ntBASIC15.06■□□□□ 0
RFC3P40938 AL096865.1-201ENST00000606796 927 ntBASIC15.06■□□□□ 0
RFC3P40938 AL390754.1-201ENST00000619088 582 ntBASIC15.06■□□□□ 0
RFC3P40938 AC084121.4-201ENST00000641598 221 ntBASIC15.06■□□□□ 0
RFC3P40938 AF228730.8-201ENST00000642140 221 ntBASIC15.06■□□□□ 0
RFC3P40938 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.06■□□□□ 0
RFC3P40938 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
RFC3P40938 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.06■□□□□ 0
RFC3P40938 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
RFC3P40938 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
RFC3P40938 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
RFC3P40938 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RFC3P40938 AP001094.4-201ENST00000579008 2176 ntBASIC15.05■□□□□ 0
RFC3P40938 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
RFC3P40938 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.05■□□□□ 0
RFC3P40938 AC022211.2-201ENST00000585075 2527 ntBASIC15.05■□□□□ 0
RFC3P40938 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
RFC3P40938 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RFC3P40938 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 SPDYE7P-202ENST00000420373 878 ntBASIC15.05■□□□□ -0
RFC3P40938 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.05■□□□□ -0
RFC3P40938 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.05■□□□□ -0
RFC3P40938 AC055876.3-201ENST00000431496 288 ntBASIC15.05■□□□□ -0
RFC3P40938 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.05■□□□□ -0
RFC3P40938 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.05■□□□□ -0
RFC3P40938 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.05■□□□□ -0
RFC3P40938 PRYP6-201ENST00000514804 343 ntBASIC15.05■□□□□ -0
RFC3P40938 AC138649.4-201ENST00000612222 287 ntBASIC15.05■□□□□ -0
RFC3P40938 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
RFC3P40938 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
RFC3P40938 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.05■□□□□ -0
RFC3P40938 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.05■□□□□ -0
RFC3P40938 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.05■□□□□ -0
RFC3P40938 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RFC3P40938 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ -0
RFC3P40938 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
RFC3P40938 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.04■□□□□ -0
RFC3P40938 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFC3P40938 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFC3P40938 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFC3P40938 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RFC3P40938 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.04■□□□□ -0
RFC3P40938 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RFC3P40938 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RFC3P40938 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.04■□□□□ -0
RFC3P40938 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.04■□□□□ -0
RFC3P40938 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.04■□□□□ -0
RFC3P40938 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms