Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS4BO75351 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 AL671710.1-201ENST00000610245 2349 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4BO75351 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.16■□□□□ 0.18
VPS4BO75351 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS4BO75351 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4BO75351 AC254562.1-201ENST00000417586 456 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 AL645939.2-201ENST00000427340 991 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VPS4BO75351 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS4BO75351 PAWRP1-201ENST00000451083 565 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.16■□□□□ 0.18
VPS4BO75351 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS4BO75351 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
VPS4BO75351 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.16■□□□□ 0.18
VPS4BO75351 AC091167.2-201ENST00000579581 588 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.16■□□□□ 0.18
VPS4BO75351 AL589182.2-201ENST00000619332 1049 ntBASIC16.16■□□□□ 0.18
VPS4BO75351 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VPS4BO75351 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VPS4BO75351 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VPS4BO75351 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS4BO75351 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
VPS4BO75351 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS4BO75351 MCCD1P2-201ENST00000423228 335 ntBASIC16.15■□□□□ 0.18
VPS4BO75351 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.15■□□□□ 0.18
VPS4BO75351 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.15■□□□□ 0.18
VPS4BO75351 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 LINC01144-201ENST00000626198 1710 ntBASIC16.15■□□□□ 0.18
VPS4BO75351 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 AL031731.1-201ENST00000642131 2094 ntBASIC16.15■□□□□ 0.18
VPS4BO75351 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.15■□□□□ 0.18
VPS4BO75351 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VPS4BO75351 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VPS4BO75351 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS4BO75351 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VPS4BO75351 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VPS4BO75351 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.14■□□□□ 0.17
VPS4BO75351 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.14■□□□□ 0.17
VPS4BO75351 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS4BO75351 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.14■□□□□ 0.17
VPS4BO75351 BX005266.1-201ENST00000473402 457 ntBASIC16.14■□□□□ 0.17
VPS4BO75351 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VPS4BO75351 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms