Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 AL161645.1-201ENST00000622716 1255 ntBASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 AC004877.2-201ENST00000623941 599 ntBASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS9D1Q9Y2B5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 AC011270.2-201ENST00000624293 2550 ntBASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 AC079328.2-201ENST00000561241 3354 ntBASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 RNA5SP416-201ENST00000516838 111 ntBASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 AL596087.1-201ENST00000400979 1969 ntBASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS9D1Q9Y2B5 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC025580.3-201ENST00000617932 1424 ntBASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC005622.1-201ENST00000636801 1703 ntBASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms