Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC129492.6-201ENST00000611383 1305 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
FOXA2Q9Y261 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 CRYGEP-201ENST00000412192 528 ntBASIC13.33□□□□□ -0.28
FOXA2Q9Y261 HCG4-201ENST00000418983 998 ntBASIC13.33□□□□□ -0.28
FOXA2Q9Y261 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 AC107918.2-201ENST00000530817 355 ntBASIC13.33□□□□□ -0.28
FOXA2Q9Y261 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
FOXA2Q9Y261 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 VN2R19P-201ENST00000442399 1052 ntBASIC13.32□□□□□ -0.28
FOXA2Q9Y261 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 AC020765.3-201ENST00000613051 740 ntBASIC13.32□□□□□ -0.28
FOXA2Q9Y261 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA2Q9Y261 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms