Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
MMP28Q9H239 EGFEM1P-202ENST00000431685 1563 ntBASIC14.6□□□□□ -0.07
MMP28Q9H239 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.6□□□□□ -0.07
MMP28Q9H239 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.6□□□□□ -0.07
MMP28Q9H239 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.59□□□□□ -0.07
MMP28Q9H239 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.59□□□□□ -0.07
MMP28Q9H239 MTCL1P1-201ENST00000446207 792 ntBASIC14.59□□□□□ -0.07
MMP28Q9H239 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 AC068472.1-201ENST00000474589 881 ntBASIC14.59□□□□□ -0.07
MMP28Q9H239 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.59□□□□□ -0.07
MMP28Q9H239 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC14.59□□□□□ -0.07
MMP28Q9H239 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.59□□□□□ -0.07
MMP28Q9H239 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MMP28Q9H239 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
MMP28Q9H239 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
MMP28Q9H239 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MMP28Q9H239 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MMP28Q9H239 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.07
MMP28Q9H239 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
MMP28Q9H239 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
MMP28Q9H239 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MMP28Q9H239 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.58□□□□□ -0.08
MMP28Q9H239 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.58□□□□□ -0.08
MMP28Q9H239 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MMP28Q9H239 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
MMP28Q9H239 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.58□□□□□ -0.08
MMP28Q9H239 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC14.58□□□□□ -0.08
MMP28Q9H239 TPM4P1-201ENST00000436100 807 ntBASIC14.58□□□□□ -0.08
MMP28Q9H239 AP002490.2-201ENST00000524791 560 ntBASIC14.58□□□□□ -0.08
MMP28Q9H239 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 IGHV3-41-201ENST00000613121 348 ntBASIC14.58□□□□□ -0.08
MMP28Q9H239 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.58□□□□□ -0.08
MMP28Q9H239 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.58□□□□□ -0.08
MMP28Q9H239 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.58□□□□□ -0.08
MMP28Q9H239 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
MMP28Q9H239 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.58□□□□□ -0.08
MMP28Q9H239 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MMP28Q9H239 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 AL161772.1-201ENST00000610494 4412 ntBASIC14.57□□□□□ -0.08
MMP28Q9H239 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.57□□□□□ -0.08
MMP28Q9H239 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 FRMD8P1-201ENST00000440433 1524 ntBASIC14.57□□□□□ -0.08
MMP28Q9H239 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MMP28Q9H239 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 AC005089.1-201ENST00000619486 2241 ntBASIC14.57□□□□□ -0.08
MMP28Q9H239 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.57□□□□□ -0.08
MMP28Q9H239 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.57□□□□□ -0.08
MMP28Q9H239 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.57□□□□□ -0.08
MMP28Q9H239 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.57□□□□□ -0.08
MMP28Q9H239 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
MMP28Q9H239 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MMP28Q9H239 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
MMP28Q9H239 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.57□□□□□ -0.08
MMP28Q9H239 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms