Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC018635.2-201ENST00000608625 364 ntBASIC26.61■■□□□ 1.85
IFT140Q96RY7 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC26.61■■□□□ 1.85
IFT140Q96RY7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
IFT140Q96RY7 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC26.61■■□□□ 1.85
IFT140Q96RY7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC26.6■■□□□ 1.85
IFT140Q96RY7 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC26.6■■□□□ 1.85
IFT140Q96RY7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 AC107373.2-201ENST00000607735 490 ntBASIC26.6■■□□□ 1.85
IFT140Q96RY7 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC26.6■■□□□ 1.85
IFT140Q96RY7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC26.6■■□□□ 1.85
IFT140Q96RY7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
IFT140Q96RY7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC26.6■■□□□ 1.85
IFT140Q96RY7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 POM121L10P-201ENST00000436994 1285 ntBASIC26.59■■□□□ 1.85
IFT140Q96RY7 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC26.59■■□□□ 1.85
IFT140Q96RY7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
IFT140Q96RY7 PCGF3-213ENST00000620529 1899 ntBASIC26.59■■□□□ 1.85
IFT140Q96RY7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
IFT140Q96RY7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
IFT140Q96RY7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
IFT140Q96RY7 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
IFT140Q96RY7 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
IFT140Q96RY7 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 AC016700.1-201ENST00000429424 312 ntBASIC26.58■■□□□ 1.85
IFT140Q96RY7 PTPA-218ENST00000435132 618 ntTSL 2 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 RN7SL720P-201ENST00000488178 304 ntBASIC26.58■■□□□ 1.85
IFT140Q96RY7 FTLP10-202ENST00000505798 471 ntBASIC26.58■■□□□ 1.85
IFT140Q96RY7 AC243562.2-201ENST00000561247 970 ntBASIC26.58■■□□□ 1.85
IFT140Q96RY7 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC26.58■■□□□ 1.85
IFT140Q96RY7 AC104581.1-202ENST00000635932 2618 ntBASIC26.58■■□□□ 1.85
IFT140Q96RY7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.58■■□□□ 1.84
IFT140Q96RY7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
IFT140Q96RY7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
IFT140Q96RY7 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
IFT140Q96RY7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
IFT140Q96RY7 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 PGGT1BP2-201ENST00000398621 1028 ntBASIC26.57■■□□□ 1.84
IFT140Q96RY7 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 KSR1-207ENST00000578981 748 ntTSL 4 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 KLK3-207ENST00000595952 969 ntTSL 3 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC092068.3-201ENST00000587894 2016 ntBASIC26.57■■□□□ 1.84
IFT140Q96RY7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 AC135050.7-201ENST00000624508 2218 ntBASIC26.57■■□□□ 1.84
IFT140Q96RY7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
IFT140Q96RY7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC26.57■■□□□ 1.84
IFT140Q96RY7 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 KRT18P43-201ENST00000469825 1281 ntBASIC26.56■■□□□ 1.84
IFT140Q96RY7 NKG7-204ENST00000595217 816 ntTSL 2 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 AP001505.2-201ENST00000616815 443 ntBASIC26.56■■□□□ 1.84
IFT140Q96RY7 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms