Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 ELK2BP-201ENST00000415014 1224 ntBASIC17.78■□□□□ 0.44
CCDC42Q96M95 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 AL121772.3-201ENST00000610840 674 ntBASIC17.78■□□□□ 0.44
CCDC42Q96M95 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.78■□□□□ 0.44
CCDC42Q96M95 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCDC42Q96M95 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 KRT18P31-201ENST00000506277 1292 ntBASIC17.77■□□□□ 0.44
CCDC42Q96M95 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AC006557.2-201ENST00000592985 1240 ntBASIC17.77■□□□□ 0.44
CCDC42Q96M95 WT1-AS_2.1-201ENST00000613208 137 ntBASIC17.77■□□□□ 0.44
CCDC42Q96M95 GGTLC5P-201ENST00000617623 998 ntBASIC17.77■□□□□ 0.44
CCDC42Q96M95 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 AC126177.1-201ENST00000547829 2218 ntBASIC17.77■□□□□ 0.44
CCDC42Q96M95 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCDC42Q96M95 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCDC42Q96M95 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.77■□□□□ 0.43
CCDC42Q96M95 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CCDC42Q96M95 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.77■□□□□ 0.43
CCDC42Q96M95 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.77■□□□□ 0.43
CCDC42Q96M95 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CCDC42Q96M95 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.76■□□□□ 0.43
CCDC42Q96M95 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CCDC42Q96M95 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms