Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRF1Q92994 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.35■□□□□ 0.69
BRF1Q92994 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.35■□□□□ 0.69
BRF1Q92994 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 PGAM5P1-201ENST00000518923 814 ntBASIC19.34■□□□□ 0.69
BRF1Q92994 KRT18P58-201ENST00000527480 1120 ntBASIC19.34■□□□□ 0.69
BRF1Q92994 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.34■□□□□ 0.69
BRF1Q92994 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.34■□□□□ 0.69
BRF1Q92994 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.34■□□□□ 0.69
BRF1Q92994 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
BRF1Q92994 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.34■□□□□ 0.69
BRF1Q92994 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
BRF1Q92994 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRF1Q92994 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.34■□□□□ 0.69
BRF1Q92994 AC007950.2-201ENST00000615045 2347 ntBASIC19.34■□□□□ 0.69
BRF1Q92994 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
BRF1Q92994 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.33■□□□□ 0.69
BRF1Q92994 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.33■□□□□ 0.69
BRF1Q92994 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.33■□□□□ 0.69
BRF1Q92994 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRF1Q92994 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.33■□□□□ 0.69
BRF1Q92994 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
BRF1Q92994 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.33■□□□□ 0.69
BRF1Q92994 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRF1Q92994 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.33■□□□□ 0.69
BRF1Q92994 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.33■□□□□ 0.69
BRF1Q92994 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
BRF1Q92994 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.33■□□□□ 0.68
BRF1Q92994 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.33■□□□□ 0.68
BRF1Q92994 AC093724.1-201ENST00000448659 1027 ntBASIC19.33■□□□□ 0.68
BRF1Q92994 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.33■□□□□ 0.68
BRF1Q92994 AL592424.1-201ENST00000563624 1536 ntBASIC19.33■□□□□ 0.68
BRF1Q92994 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.33■□□□□ 0.68
BRF1Q92994 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.33■□□□□ 0.68
BRF1Q92994 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
BRF1Q92994 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
BRF1Q92994 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
BRF1Q92994 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRF1Q92994 WASH6P-202ENST00000359512 1437 ntBASIC19.33■□□□□ 0.68
BRF1Q92994 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
BRF1Q92994 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
BRF1Q92994 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.33■□□□□ 0.68
BRF1Q92994 AC024909.3-201ENST00000611513 2257 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.32■□□□□ 0.68
BRF1Q92994 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 AC002056.1-201ENST00000395613 760 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 AC112191.1-201ENST00000523689 701 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.32■□□□□ 0.68
BRF1Q92994 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.32■□□□□ 0.68
BRF1Q92994 AC091812.2-201ENST00000619081 385 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 AL161645.1-201ENST00000622716 1255 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
BRF1Q92994 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.32■□□□□ 0.68
BRF1Q92994 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRF1Q92994 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
BRF1Q92994 AC132872.4-202ENST00000622924 2756 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 AC073439.1-201ENST00000624121 1774 ntBASIC19.32■□□□□ 0.68
BRF1Q92994 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
BRF1Q92994 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRF1Q92994 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
BRF1Q92994 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms