Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
SF3A1Q15459 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SF3A1Q15459 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SF3A1Q15459 PAUPAR-201ENST00000630360 2965 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.05■□□□□ 0.64
SF3A1Q15459 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.05■□□□□ 0.64
SF3A1Q15459 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 MRPL20P1-201ENST00000400819 433 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 AC092910.1-201ENST00000482027 1129 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 AP002469.2-201ENST00000531724 424 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SF3A1Q15459 MIR7706-201ENST00000613747 67 ntBASIC19.05■□□□□ 0.64
SF3A1Q15459 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.05■□□□□ 0.64
SF3A1Q15459 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.05■□□□□ 0.64
SF3A1Q15459 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SF3A1Q15459 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 AL596087.1-201ENST00000400979 1969 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SF3A1Q15459 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.04■□□□□ 0.64
SF3A1Q15459 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.04■□□□□ 0.64
SF3A1Q15459 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 HCG4-201ENST00000418983 998 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.04■□□□□ 0.64
SF3A1Q15459 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.04■□□□□ 0.64
SF3A1Q15459 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SF3A1Q15459 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 AC022188.1-201ENST00000620960 1664 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.04■□□□□ 0.64
SF3A1Q15459 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19.04■□□□□ 0.64
SF3A1Q15459 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SF3A1Q15459 GPAA1P2-202ENST00000606848 1787 ntBASIC19.04■□□□□ 0.64
SF3A1Q15459 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.03■□□□□ 0.64
SF3A1Q15459 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.03■□□□□ 0.64
SF3A1Q15459 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.03■□□□□ 0.64
SF3A1Q15459 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.03■□□□□ 0.64
SF3A1Q15459 FAAHP1-202ENST00000446499 1238 ntBASIC19.03■□□□□ 0.64
SF3A1Q15459 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms