Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
TOP3BO95985 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.91■□□□□ 0.3
TOP3BO95985 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TOP3BO95985 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TOP3BO95985 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.9■□□□□ 0.3
TOP3BO95985 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TOP3BO95985 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 UGT1A2P-201ENST00000454886 866 ntBASIC16.9■□□□□ 0.3
TOP3BO95985 TERF1P3-201ENST00000505638 1227 ntBASIC16.9■□□□□ 0.3
TOP3BO95985 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.9■□□□□ 0.3
TOP3BO95985 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.9■□□□□ 0.3
TOP3BO95985 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.9■□□□□ 0.3
TOP3BO95985 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.9■□□□□ 0.3
TOP3BO95985 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
TOP3BO95985 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TOP3BO95985 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TOP3BO95985 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.89■□□□□ 0.3
TOP3BO95985 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.89■□□□□ 0.3
TOP3BO95985 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
TOP3BO95985 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.89■□□□□ 0.3
TOP3BO95985 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.89■□□□□ 0.29
TOP3BO95985 TSPY16P-201ENST00000449843 468 ntBASIC16.89■□□□□ 0.29
TOP3BO95985 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
TOP3BO95985 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TOP3BO95985 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TOP3BO95985 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.89■□□□□ 0.29
TOP3BO95985 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.88■□□□□ 0.29
TOP3BO95985 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
TOP3BO95985 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TOP3BO95985 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.88■□□□□ 0.29
TOP3BO95985 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.88■□□□□ 0.29
TOP3BO95985 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TOP3BO95985 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms