Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.81■□□□□ 0.12
SEMA3DO95025 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.81■□□□□ 0.12
SEMA3DO95025 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.81■□□□□ 0.12
SEMA3DO95025 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.81■□□□□ 0.12
SEMA3DO95025 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.81■□□□□ 0.12
SEMA3DO95025 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.81■□□□□ 0.12
SEMA3DO95025 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.81■□□□□ 0.12
SEMA3DO95025 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.81■□□□□ 0.12
SEMA3DO95025 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
SEMA3DO95025 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.81■□□□□ 0.12
SEMA3DO95025 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.81■□□□□ 0.12
SEMA3DO95025 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SEMA3DO95025 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SEMA3DO95025 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SEMA3DO95025 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SEMA3DO95025 HYMAI-201ENST00000635591 3347 ntBASIC15.81■□□□□ 0.12
SEMA3DO95025 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SEMA3DO95025 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.8■□□□□ 0.12
SEMA3DO95025 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SEMA3DO95025 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 ZNF259P1-201ENST00000407656 1365 ntBASIC15.8■□□□□ 0.12
SEMA3DO95025 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 AL590627.1-203ENST00000421194 1026 ntBASIC15.8■□□□□ 0.12
SEMA3DO95025 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.8■□□□□ 0.12
SEMA3DO95025 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.8■□□□□ 0.12
SEMA3DO95025 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.8■□□□□ 0.12
SEMA3DO95025 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.8■□□□□ 0.12
SEMA3DO95025 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.8■□□□□ 0.12
SEMA3DO95025 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SEMA3DO95025 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.8■□□□□ 0.12
SEMA3DO95025 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SEMA3DO95025 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SEMA3DO95025 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.79■□□□□ 0.12
SEMA3DO95025 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.79■□□□□ 0.12
SEMA3DO95025 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.79■□□□□ 0.12
SEMA3DO95025 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 AL009183.1-201ENST00000603760 355 ntBASIC15.79■□□□□ 0.12
SEMA3DO95025 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 AC005052.1-201ENST00000625181 2492 ntBASIC15.79■□□□□ 0.12
SEMA3DO95025 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.79■□□□□ 0.12
SEMA3DO95025 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SEMA3DO95025 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SEMA3DO95025 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms