Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.51□□□□□ -0.09
LMX1BO60663 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 ELK2BP-201ENST00000415014 1224 ntBASIC14.51□□□□□ -0.09
LMX1BO60663 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.51□□□□□ -0.09
LMX1BO60663 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.51□□□□□ -0.09
LMX1BO60663 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.51□□□□□ -0.09
LMX1BO60663 SLC25A6P2-201ENST00000497974 877 ntBASIC14.51□□□□□ -0.09
LMX1BO60663 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.51□□□□□ -0.09
LMX1BO60663 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.51□□□□□ -0.09
LMX1BO60663 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 AC004706.3-202ENST00000621574 984 ntBASIC14.51□□□□□ -0.09
LMX1BO60663 AC010491.1-201ENST00000563101 2797 ntBASIC14.51□□□□□ -0.09
LMX1BO60663 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LMX1BO60663 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
LMX1BO60663 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.51□□□□□ -0.09
LMX1BO60663 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
LMX1BO60663 PI4KAP1-204ENST00000612579 1703 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 SLC22A20-204ENST00000530038 1673 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 AC254562.1-201ENST00000417586 456 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 KRT18P2-201ENST00000447938 1258 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.5□□□□□ -0.09
LMX1BO60663 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 MIR4469-201ENST00000583919 79 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 AC105917.1-201ENST00000506637 2539 ntBASIC14.5□□□□□ -0.09
LMX1BO60663 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LMX1BO60663 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.5□□□□□ -0.09
LMX1BO60663 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.5□□□□□ -0.09
LMX1BO60663 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.49□□□□□ -0.09
LMX1BO60663 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms