Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA9Q9Y5G4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA9Q9Y5G4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA9Q9Y5G4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHGA9Q9Y5G4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.22■■□□□ 1.15
PCDHGA9Q9Y5G4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 LINC01003-201ENST00000564834 1764 ntBASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 AL449106.1-201ENST00000608517 1980 ntBASIC22.21■■□□□ 1.15
PCDHGA9Q9Y5G4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.2■■□□□ 1.15
PCDHGA9Q9Y5G4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA9Q9Y5G4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
PCDHGA9Q9Y5G4 AC137630.3-201ENST00000607245 391 ntBASIC22.2■■□□□ 1.14
PCDHGA9Q9Y5G4 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
PCDHGA9Q9Y5G4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA9Q9Y5G4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 UNC93B8-201ENST00000511903 705 ntBASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA9Q9Y5G4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHGA9Q9Y5G4 KRT16P3-201ENST00000439127 1283 ntBASIC22.18■■□□□ 1.14
PCDHGA9Q9Y5G4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PCDHGA9Q9Y5G4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA9Q9Y5G4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.15■■□□□ 1.14
PCDHGA9Q9Y5G4 AC021242.3-201ENST00000607598 1377 ntBASIC22.14■■□□□ 1.14
PCDHGA9Q9Y5G4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHGA9Q9Y5G4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA9Q9Y5G4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHGA9Q9Y5G4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHGA9Q9Y5G4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA9Q9Y5G4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.13■■□□□ 1.13
PCDHGA9Q9Y5G4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA9Q9Y5G4 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA9Q9Y5G4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 AC120024.1-201ENST00000562672 995 ntBASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
PCDHGA9Q9Y5G4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.11■■□□□ 1.13
PCDHGA9Q9Y5G4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHGA9Q9Y5G4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA9Q9Y5G4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.09■■□□□ 1.13
PCDHGA9Q9Y5G4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA9Q9Y5G4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PCDHGA9Q9Y5G4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA9Q9Y5G4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PCDHGA9Q9Y5G4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.08■■□□□ 1.13
PCDHGA9Q9Y5G4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
PCDHGA9Q9Y5G4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
PCDHGA9Q9Y5G4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHGA9Q9Y5G4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHGA9Q9Y5G4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PCDHGA9Q9Y5G4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms