Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.81■■□□□ 1.08
LRFN1Q9P244 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.81■■□□□ 1.08
LRFN1Q9P244 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRFN1Q9P244 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
LRFN1Q9P244 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.81■■□□□ 1.08
LRFN1Q9P244 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.81■■□□□ 1.08
LRFN1Q9P244 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRFN1Q9P244 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRFN1Q9P244 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRFN1Q9P244 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LRFN1Q9P244 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRFN1Q9P244 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRFN1Q9P244 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.8■■□□□ 1.08
LRFN1Q9P244 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
LRFN1Q9P244 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
LRFN1Q9P244 AC120024.1-201ENST00000562672 995 ntBASIC21.8■■□□□ 1.08
LRFN1Q9P244 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRFN1Q9P244 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRFN1Q9P244 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
LRFN1Q9P244 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.8■■□□□ 1.08
LRFN1Q9P244 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRFN1Q9P244 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LRFN1Q9P244 BX664725.1-201ENST00000438252 379 ntBASIC21.79■■□□□ 1.08
LRFN1Q9P244 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.79■■□□□ 1.08
LRFN1Q9P244 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.79■■□□□ 1.08
LRFN1Q9P244 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRFN1Q9P244 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRFN1Q9P244 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.78■■□□□ 1.08
LRFN1Q9P244 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
LRFN1Q9P244 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRFN1Q9P244 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRFN1Q9P244 KRT125P-201ENST00000546827 989 ntBASIC21.78■■□□□ 1.08
LRFN1Q9P244 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
LRFN1Q9P244 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRFN1Q9P244 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.78■■□□□ 1.08
LRFN1Q9P244 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRFN1Q9P244 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LRFN1Q9P244 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRFN1Q9P244 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRFN1Q9P244 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRFN1Q9P244 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.77■■□□□ 1.08
LRFN1Q9P244 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.77■■□□□ 1.08
LRFN1Q9P244 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.76■■□□□ 1.07
LRFN1Q9P244 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.76■■□□□ 1.07
LRFN1Q9P244 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRFN1Q9P244 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRFN1Q9P244 AL121749.1-202ENST00000609313 2153 ntBASIC21.75■■□□□ 1.07
LRFN1Q9P244 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRFN1Q9P244 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LRFN1Q9P244 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LRFN1Q9P244 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.75■■□□□ 1.07
LRFN1Q9P244 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRFN1Q9P244 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRFN1Q9P244 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRFN1Q9P244 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.74■■□□□ 1.07
LRFN1Q9P244 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
LRFN1Q9P244 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.74■■□□□ 1.07
LRFN1Q9P244 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRFN1Q9P244 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LRFN1Q9P244 ERN1-208ENST00000606895 2068 ntBASIC21.73■■□□□ 1.07
LRFN1Q9P244 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRFN1Q9P244 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LRFN1Q9P244 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRFN1Q9P244 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRFN1Q9P244 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.73■■□□□ 1.07
LRFN1Q9P244 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRFN1Q9P244 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRFN1Q9P244 AC137630.3-201ENST00000607245 391 ntBASIC21.72■■□□□ 1.07
LRFN1Q9P244 MIR4787-201ENST00000607364 84 ntBASIC21.72■■□□□ 1.07
LRFN1Q9P244 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.72■■□□□ 1.07
LRFN1Q9P244 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.72■■□□□ 1.07
LRFN1Q9P244 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.72■■□□□ 1.07
LRFN1Q9P244 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRFN1Q9P244 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRFN1Q9P244 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.71■■□□□ 1.07
LRFN1Q9P244 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRFN1Q9P244 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.71■■□□□ 1.07
LRFN1Q9P244 AC131212.1-201ENST00000613771 668 ntBASIC21.71■■□□□ 1.07
LRFN1Q9P244 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRFN1Q9P244 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.7■■□□□ 1.06
LRFN1Q9P244 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 AL356441.2-201ENST00000443009 864 ntBASIC21.7■■□□□ 1.06
LRFN1Q9P244 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
LRFN1Q9P244 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.7■■□□□ 1.06
LRFN1Q9P244 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRFN1Q9P244 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms