Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
LRCH3Q96II8 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.04■■□□□ 1.76
LRCH3Q96II8 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
LRCH3Q96II8 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.04■■□□□ 1.76
LRCH3Q96II8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.04■■□□□ 1.76
LRCH3Q96II8 AC139426.1-201ENST00000568218 2529 ntBASIC26.04■■□□□ 1.76
LRCH3Q96II8 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
LRCH3Q96II8 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
LRCH3Q96II8 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
LRCH3Q96II8 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.03■■□□□ 1.76
LRCH3Q96II8 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.03■■□□□ 1.76
LRCH3Q96II8 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LRCH3Q96II8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LRCH3Q96II8 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LRCH3Q96II8 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
LRCH3Q96II8 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
LRCH3Q96II8 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.01■■□□□ 1.75
LRCH3Q96II8 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
LRCH3Q96II8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
LRCH3Q96II8 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26■■□□□ 1.75
LRCH3Q96II8 AP004833.2-201ENST00000532228 1454 ntBASIC26■■□□□ 1.75
LRCH3Q96II8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26■■□□□ 1.75
LRCH3Q96II8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
LRCH3Q96II8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
LRCH3Q96II8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
LRCH3Q96II8 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26■■□□□ 1.75
LRCH3Q96II8 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.99■■□□□ 1.75
LRCH3Q96II8 ESRRAP2-201ENST00000418437 1549 ntBASIC25.99■■□□□ 1.75
LRCH3Q96II8 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRCH3Q96II8 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
LRCH3Q96II8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.99■■□□□ 1.75
LRCH3Q96II8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRCH3Q96II8 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.99■■□□□ 1.75
LRCH3Q96II8 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
LRCH3Q96II8 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.99■■□□□ 1.75
LRCH3Q96II8 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.99■■□□□ 1.75
LRCH3Q96II8 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
LRCH3Q96II8 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.98■■□□□ 1.75
LRCH3Q96II8 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
LRCH3Q96II8 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.98■■□□□ 1.75
LRCH3Q96II8 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
LRCH3Q96II8 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
LRCH3Q96II8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
LRCH3Q96II8 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
LRCH3Q96II8 MIR939-201ENST00000401314 82 ntBASIC25.97■■□□□ 1.75
LRCH3Q96II8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.97■■□□□ 1.75
LRCH3Q96II8 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
LRCH3Q96II8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC25.96■■□□□ 1.75
LRCH3Q96II8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.96■■□□□ 1.75
LRCH3Q96II8 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
LRCH3Q96II8 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.75
LRCH3Q96II8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRCH3Q96II8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
LRCH3Q96II8 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRCH3Q96II8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRCH3Q96II8 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.95■■□□□ 1.74
LRCH3Q96II8 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.95■■□□□ 1.74
LRCH3Q96II8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
LRCH3Q96II8 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
LRCH3Q96II8 ID1-201ENST00000376105 1233 ntBASIC25.94■■□□□ 1.74
LRCH3Q96II8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC25.94■■□□□ 1.74
LRCH3Q96II8 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
LRCH3Q96II8 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
LRCH3Q96II8 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.93■■□□□ 1.74
LRCH3Q96II8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC25.93■■□□□ 1.74
LRCH3Q96II8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.93■■□□□ 1.74
LRCH3Q96II8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
LRCH3Q96II8 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
LRCH3Q96II8 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC25.92■■□□□ 1.74
LRCH3Q96II8 AP001330.3-201ENST00000520123 633 ntBASIC25.92■■□□□ 1.74
LRCH3Q96II8 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
LRCH3Q96II8 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
LRCH3Q96II8 KRT18P10-201ENST00000388836 1287 ntBASIC25.91■■□□□ 1.74
LRCH3Q96II8 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.91■■□□□ 1.74
LRCH3Q96II8 AL137784.2-201ENST00000607332 1000 ntBASIC25.91■■□□□ 1.74
LRCH3Q96II8 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
LRCH3Q96II8 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 AC022517.1-201ENST00000592429 346 ntBASIC25.9■■□□□ 1.74
LRCH3Q96II8 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRCH3Q96II8 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
LRCH3Q96II8 TFPT-201ENST00000391757 774 ntTSL 5 BASIC25.89■■□□□ 1.74
LRCH3Q96II8 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.74
LRCH3Q96II8 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
LRCH3Q96II8 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
LRCH3Q96II8 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
LRCH3Q96II8 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.88■■□□□ 1.73
LRCH3Q96II8 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
LRCH3Q96II8 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
LRCH3Q96II8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
LRCH3Q96II8 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.87■■□□□ 1.73
LRCH3Q96II8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
LRCH3Q96II8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC25.87■■□□□ 1.73
LRCH3Q96II8 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
LRCH3Q96II8 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms