Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
CCHCR1Q8TD31 AP003733.4-201ENST00000623785 1697 ntBASIC24.62■■□□□ 1.53
CCHCR1Q8TD31 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCHCR1Q8TD31 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.61■■□□□ 1.53
CCHCR1Q8TD31 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCHCR1Q8TD31 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 SMPD5-203ENST00000639008 1464 ntBASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CCHCR1Q8TD31 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.59■■□□□ 1.53
CCHCR1Q8TD31 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCHCR1Q8TD31 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCHCR1Q8TD31 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCHCR1Q8TD31 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.59■■□□□ 1.53
CCHCR1Q8TD31 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.58■■□□□ 1.53
CCHCR1Q8TD31 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCHCR1Q8TD31 RARRES2P2-201ENST00000394842 485 ntBASIC24.58■■□□□ 1.53
CCHCR1Q8TD31 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.52
CCHCR1Q8TD31 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.58■■□□□ 1.52
CCHCR1Q8TD31 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
CCHCR1Q8TD31 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCHCR1Q8TD31 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 AC025884.2-201ENST00000553429 711 ntBASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCHCR1Q8TD31 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCHCR1Q8TD31 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.53■■□□□ 1.52
CCHCR1Q8TD31 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCHCR1Q8TD31 MIR3960-201ENST00000583311 91 ntBASIC24.51■■□□□ 1.51
CCHCR1Q8TD31 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.51■■□□□ 1.51
CCHCR1Q8TD31 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.51■■□□□ 1.51
CCHCR1Q8TD31 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
CCHCR1Q8TD31 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 SLC6A10P-202ENST00000431994 2058 ntBASIC24.5■■□□□ 1.51
CCHCR1Q8TD31 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 AC007029.1-201ENST00000604183 313 ntBASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CCHCR1Q8TD31 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CCHCR1Q8TD31 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.47■■□□□ 1.51
CCHCR1Q8TD31 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms