Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
USHBP1Q8N6Y0 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.73■■■□□ 2.67
USHBP1Q8N6Y0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.73■■■□□ 2.67
USHBP1Q8N6Y0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.73■■■□□ 2.67
USHBP1Q8N6Y0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
USHBP1Q8N6Y0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.72■■■□□ 2.67
USHBP1Q8N6Y0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
USHBP1Q8N6Y0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31.71■■■□□ 2.67
USHBP1Q8N6Y0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC31.71■■■□□ 2.67
USHBP1Q8N6Y0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC31.7■■■□□ 2.67
USHBP1Q8N6Y0 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC31.7■■■□□ 2.67
USHBP1Q8N6Y0 AC092028.1-203ENST00000608262 953 ntBASIC31.7■■■□□ 2.67
USHBP1Q8N6Y0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
USHBP1Q8N6Y0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.69■■■□□ 2.66
USHBP1Q8N6Y0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.69■■■□□ 2.66
USHBP1Q8N6Y0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
USHBP1Q8N6Y0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC31.68■■■□□ 2.66
USHBP1Q8N6Y0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC31.68■■■□□ 2.66
USHBP1Q8N6Y0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
USHBP1Q8N6Y0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
USHBP1Q8N6Y0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC31.66■■■□□ 2.66
USHBP1Q8N6Y0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC31.65■■■□□ 2.66
USHBP1Q8N6Y0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
USHBP1Q8N6Y0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
USHBP1Q8N6Y0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
USHBP1Q8N6Y0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USHBP1Q8N6Y0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
USHBP1Q8N6Y0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC31.64■■■□□ 2.66
USHBP1Q8N6Y0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
USHBP1Q8N6Y0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
USHBP1Q8N6Y0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC31.62■■■□□ 2.65
USHBP1Q8N6Y0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC31.62■■■□□ 2.65
USHBP1Q8N6Y0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC31.62■■■□□ 2.65
USHBP1Q8N6Y0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USHBP1Q8N6Y0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
USHBP1Q8N6Y0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 AC131281.2-201ENST00000520478 145 ntBASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.6■■■□□ 2.65
USHBP1Q8N6Y0 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC31.59■■■□□ 2.65
USHBP1Q8N6Y0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
USHBP1Q8N6Y0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.57■■■□□ 2.64
USHBP1Q8N6Y0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
USHBP1Q8N6Y0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC31.57■■■□□ 2.64
USHBP1Q8N6Y0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USHBP1Q8N6Y0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USHBP1Q8N6Y0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
USHBP1Q8N6Y0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC31.56■■■□□ 2.64
USHBP1Q8N6Y0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
USHBP1Q8N6Y0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 SRR-208ENST00000576848 588 ntTSL 4 BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
USHBP1Q8N6Y0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
USHBP1Q8N6Y0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 AC010997.5-201ENST00000609182 354 ntBASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC31.53■■■□□ 2.64
USHBP1Q8N6Y0 AL117332.1-201ENST00000622628 974 ntBASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms