Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22■■□□□ 1.11
BEST3Q8N1M1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC22■■□□□ 1.11
BEST3Q8N1M1 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22■■□□□ 1.11
BEST3Q8N1M1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BEST3Q8N1M1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22■■□□□ 1.11
BEST3Q8N1M1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22■■□□□ 1.11
BEST3Q8N1M1 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22■■□□□ 1.11
BEST3Q8N1M1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.99■■□□□ 1.11
BEST3Q8N1M1 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.99■■□□□ 1.11
BEST3Q8N1M1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.98■■□□□ 1.11
BEST3Q8N1M1 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BEST3Q8N1M1 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BEST3Q8N1M1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.98■■□□□ 1.11
BEST3Q8N1M1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
BEST3Q8N1M1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 GUSBP5-201ENST00000418136 578 ntBASIC21.96■■□□□ 1.11
BEST3Q8N1M1 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
BEST3Q8N1M1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.96■■□□□ 1.11
BEST3Q8N1M1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
BEST3Q8N1M1 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
BEST3Q8N1M1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
BEST3Q8N1M1 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BEST3Q8N1M1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 AC239859.2-201ENST00000444165 318 ntBASIC21.94■■□□□ 1.1
BEST3Q8N1M1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BEST3Q8N1M1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 THA1P-201ENST00000590384 1145 ntBASIC21.93■■□□□ 1.1
BEST3Q8N1M1 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
BEST3Q8N1M1 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 KRT18P24-201ENST00000344739 1156 ntBASIC21.92■■□□□ 1.1
BEST3Q8N1M1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
BEST3Q8N1M1 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.91■■□□□ 1.1
BEST3Q8N1M1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BEST3Q8N1M1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.91■■□□□ 1.1
BEST3Q8N1M1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.91■■□□□ 1.1
BEST3Q8N1M1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
BEST3Q8N1M1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 AL592295.1-201ENST00000400984 884 ntBASIC21.9■■□□□ 1.1
BEST3Q8N1M1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 AC120024.1-201ENST00000562672 995 ntBASIC21.9■■□□□ 1.1
BEST3Q8N1M1 Z92544.1-202ENST00000571933 1220 ntBASIC21.9■■□□□ 1.1
BEST3Q8N1M1 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.9■■□□□ 1.1
BEST3Q8N1M1 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.89■■□□□ 1.09
BEST3Q8N1M1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.89■■□□□ 1.09
BEST3Q8N1M1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.88■■□□□ 1.09
BEST3Q8N1M1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BEST3Q8N1M1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms