Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.65■■□□□ 1.86
NKX3-2P78367 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.65■■□□□ 1.86
NKX3-2P78367 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
NKX3-2P78367 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.65■■□□□ 1.86
NKX3-2P78367 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
NKX3-2P78367 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
NKX3-2P78367 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
NKX3-2P78367 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.64■■□□□ 1.86
NKX3-2P78367 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.64■■□□□ 1.86
NKX3-2P78367 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
NKX3-2P78367 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.64■■□□□ 1.86
NKX3-2P78367 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.64■■□□□ 1.86
NKX3-2P78367 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
NKX3-2P78367 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX3-2P78367 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.63■■□□□ 1.85
NKX3-2P78367 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.63■■□□□ 1.85
NKX3-2P78367 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
NKX3-2P78367 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
NKX3-2P78367 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
NKX3-2P78367 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NKX3-2P78367 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.62■■□□□ 1.85
NKX3-2P78367 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
NKX3-2P78367 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.62■■□□□ 1.85
NKX3-2P78367 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
NKX3-2P78367 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NKX3-2P78367 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
NKX3-2P78367 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.61■■□□□ 1.85
NKX3-2P78367 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.61■■□□□ 1.85
NKX3-2P78367 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.61■■□□□ 1.85
NKX3-2P78367 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.61■■□□□ 1.85
NKX3-2P78367 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.6■■□□□ 1.85
NKX3-2P78367 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
NKX3-2P78367 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.6■■□□□ 1.85
NKX3-2P78367 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NKX3-2P78367 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
NKX3-2P78367 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX3-2P78367 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.6■■□□□ 1.85
NKX3-2P78367 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
NKX3-2P78367 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.6■■□□□ 1.85
NKX3-2P78367 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.6■■□□□ 1.85
NKX3-2P78367 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX3-2P78367 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.6■■□□□ 1.85
NKX3-2P78367 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
NKX3-2P78367 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
NKX3-2P78367 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
NKX3-2P78367 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NKX3-2P78367 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NKX3-2P78367 AL136116.3-201ENST00000402907 1138 ntBASIC26.59■■□□□ 1.85
NKX3-2P78367 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NKX3-2P78367 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.59■■□□□ 1.85
NKX3-2P78367 AC139426.1-201ENST00000568218 2529 ntBASIC26.58■■□□□ 1.85
NKX3-2P78367 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.58■■□□□ 1.85
NKX3-2P78367 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.58■■□□□ 1.85
NKX3-2P78367 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NKX3-2P78367 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NKX3-2P78367 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.57■■□□□ 1.84
NKX3-2P78367 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NKX3-2P78367 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.57■■□□□ 1.84
NKX3-2P78367 MTDHP2-201ENST00000601468 714 ntBASIC26.57■■□□□ 1.84
NKX3-2P78367 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.57■■□□□ 1.84
NKX3-2P78367 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NKX3-2P78367 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.57■■□□□ 1.84
NKX3-2P78367 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NKX3-2P78367 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX3-2P78367 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.56■■□□□ 1.84
NKX3-2P78367 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
NKX3-2P78367 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.56■■□□□ 1.84
NKX3-2P78367 AC110285.6-201ENST00000617652 491 ntBASIC26.56■■□□□ 1.84
NKX3-2P78367 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
NKX3-2P78367 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
NKX3-2P78367 AL356740.2-201ENST00000601559 647 ntBASIC26.55■■□□□ 1.84
NKX3-2P78367 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.55■■□□□ 1.84
NKX3-2P78367 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.55■■□□□ 1.84
NKX3-2P78367 AF131216.4-201ENST00000638924 1588 ntBASIC26.54■■□□□ 1.84
NKX3-2P78367 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX3-2P78367 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX3-2P78367 MIR4466-201ENST00000606121 54 ntBASIC26.54■■□□□ 1.84
NKX3-2P78367 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX3-2P78367 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC26.53■■□□□ 1.84
NKX3-2P78367 AL512631.2-201ENST00000604634 923 ntBASIC26.53■■□□□ 1.84
NKX3-2P78367 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX3-2P78367 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NKX3-2P78367 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.52■■□□□ 1.84
NKX3-2P78367 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.52■■□□□ 1.84
NKX3-2P78367 AC133561.4-201ENST00000566112 224 ntBASIC26.52■■□□□ 1.84
NKX3-2P78367 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NKX3-2P78367 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.52■■□□□ 1.84
NKX3-2P78367 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.51■■□□□ 1.83
NKX3-2P78367 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.51■■□□□ 1.83
NKX3-2P78367 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.51■■□□□ 1.83
NKX3-2P78367 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
NKX3-2P78367 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX3-2P78367 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX3-2P78367 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX3-2P78367 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX3-2P78367 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX3-2P78367 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX3-2P78367 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX3-2P78367 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NKX3-2P78367 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms