Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
RNF4P78317 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RNF4P78317 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF4P78317 AC103834.1-201ENST00000520383 144 ntBASIC22.03■■□□□ 1.12
RNF4P78317 MIR4508-201ENST00000584178 70 ntBASIC22.03■■□□□ 1.12
RNF4P78317 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF4P78317 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF4P78317 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.02■■□□□ 1.12
RNF4P78317 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF4P78317 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF4P78317 YBX1P4-201ENST00000392794 808 ntBASIC22.02■■□□□ 1.12
RNF4P78317 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RNF4P78317 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF4P78317 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
RNF4P78317 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.11
RNF4P78317 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.01■■□□□ 1.11
RNF4P78317 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RNF4P78317 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.01■■□□□ 1.11
RNF4P78317 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.01■■□□□ 1.11
RNF4P78317 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
RNF4P78317 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.01■■□□□ 1.11
RNF4P78317 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF4P78317 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22■■□□□ 1.11
RNF4P78317 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22■■□□□ 1.11
RNF4P78317 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22■■□□□ 1.11
RNF4P78317 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22■■□□□ 1.11
RNF4P78317 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22■■□□□ 1.11
RNF4P78317 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22■■□□□ 1.11
RNF4P78317 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
RNF4P78317 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22■■□□□ 1.11
RNF4P78317 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22■■□□□ 1.11
RNF4P78317 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF4P78317 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
RNF4P78317 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
RNF4P78317 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
RNF4P78317 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
RNF4P78317 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.99■■□□□ 1.11
RNF4P78317 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.98■■□□□ 1.11
RNF4P78317 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.98■■□□□ 1.11
RNF4P78317 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
RNF4P78317 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF4P78317 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF4P78317 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RNF4P78317 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
RNF4P78317 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
RNF4P78317 AC022616.5-201ENST00000518796 181 ntBASIC21.97■■□□□ 1.11
RNF4P78317 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
RNF4P78317 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
RNF4P78317 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
RNF4P78317 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.96■■□□□ 1.11
RNF4P78317 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
RNF4P78317 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.96■■□□□ 1.11
RNF4P78317 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF4P78317 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
RNF4P78317 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 AL592295.1-201ENST00000400984 884 ntBASIC21.95■■□□□ 1.1
RNF4P78317 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
RNF4P78317 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.95■■□□□ 1.1
RNF4P78317 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
RNF4P78317 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.94■■□□□ 1.1
RNF4P78317 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
RNF4P78317 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.94■■□□□ 1.1
RNF4P78317 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF4P78317 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
RNF4P78317 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.94■■□□□ 1.1
RNF4P78317 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF4P78317 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF4P78317 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
RNF4P78317 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.93■■□□□ 1.1
RNF4P78317 AC103724.3-201ENST00000564481 992 ntBASIC21.93■■□□□ 1.1
RNF4P78317 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
RNF4P78317 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF4P78317 FOXO3B-201ENST00000395675 1928 ntBASIC21.92■■□□□ 1.1
RNF4P78317 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF4P78317 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RNF4P78317 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RNF4P78317 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.92■■□□□ 1.1
RNF4P78317 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
RNF4P78317 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
RNF4P78317 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF4P78317 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
RNF4P78317 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
RNF4P78317 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
RNF4P78317 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF4P78317 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.91■■□□□ 1.1
RNF4P78317 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RNF4P78317 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF4P78317 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF4P78317 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF4P78317 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF4P78317 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms