Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PEX3P56589 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PEX3P56589 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.26■■□□□ 1.79
PEX3P56589 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.26■■□□□ 1.79
PEX3P56589 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PEX3P56589 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.25■■□□□ 1.79
PEX3P56589 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.25■■□□□ 1.79
PEX3P56589 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.25■■□□□ 1.79
PEX3P56589 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 IDNK-201ENST00000376417 511 ntTSL 5 BASIC26.24■■□□□ 1.79
PEX3P56589 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.24■■□□□ 1.79
PEX3P56589 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PEX3P56589 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.24■■□□□ 1.79
PEX3P56589 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.23■■□□□ 1.79
PEX3P56589 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
PEX3P56589 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC26.23■■□□□ 1.79
PEX3P56589 AC019171.1-201ENST00000601251 1056 ntBASIC26.23■■□□□ 1.79
PEX3P56589 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PEX3P56589 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PEX3P56589 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PEX3P56589 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PEX3P56589 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.22■■□□□ 1.79
PEX3P56589 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PEX3P56589 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.22■■□□□ 1.79
PEX3P56589 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
PEX3P56589 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.21■■□□□ 1.79
PEX3P56589 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PEX3P56589 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PEX3P56589 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.21■■□□□ 1.79
PEX3P56589 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.21■■□□□ 1.79
PEX3P56589 KRT8P33-201ENST00000508125 1423 ntBASIC26.21■■□□□ 1.79
PEX3P56589 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
PEX3P56589 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PEX3P56589 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
PEX3P56589 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
PEX3P56589 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
PEX3P56589 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
PEX3P56589 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
PEX3P56589 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PEX3P56589 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.19■■□□□ 1.78
PEX3P56589 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
PEX3P56589 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PEX3P56589 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PEX3P56589 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PEX3P56589 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
PEX3P56589 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
PEX3P56589 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PEX3P56589 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PEX3P56589 AC103834.1-201ENST00000520383 144 ntBASIC26.17■■□□□ 1.78
PEX3P56589 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.17■■□□□ 1.78
PEX3P56589 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PEX3P56589 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PEX3P56589 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PEX3P56589 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.16■■□□□ 1.78
PEX3P56589 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PEX3P56589 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
PEX3P56589 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PEX3P56589 RARRES2P1-201ENST00000474487 481 ntBASIC26.16■■□□□ 1.78
PEX3P56589 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.16■■□□□ 1.78
PEX3P56589 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PEX3P56589 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
PEX3P56589 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
PEX3P56589 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PEX3P56589 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.14■■□□□ 1.78
PEX3P56589 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PEX3P56589 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
PEX3P56589 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
PEX3P56589 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.14■■□□□ 1.78
PEX3P56589 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PEX3P56589 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
PEX3P56589 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
PEX3P56589 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.14■■□□□ 1.77
PEX3P56589 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PEX3P56589 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
PEX3P56589 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 MIR4508-201ENST00000584178 70 ntBASIC26.13■■□□□ 1.77
PEX3P56589 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.13■■□□□ 1.77
PEX3P56589 FOXO3B-201ENST00000395675 1928 ntBASIC26.13■■□□□ 1.77
PEX3P56589 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PEX3P56589 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PEX3P56589 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.12■■□□□ 1.77
PEX3P56589 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PEX3P56589 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.12■■□□□ 1.77
PEX3P56589 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.12■■□□□ 1.77
PEX3P56589 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PEX3P56589 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
PEX3P56589 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PEX3P56589 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PEX3P56589 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.11■■□□□ 1.77
PEX3P56589 YBX1P4-201ENST00000392794 808 ntBASIC26.11■■□□□ 1.77
PEX3P56589 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms