Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CXCL12P48061 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
CXCL12P48061 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CXCL12P48061 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CXCL12P48061 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CXCL12P48061 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CXCL12P48061 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
CXCL12P48061 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CXCL12P48061 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24■■□□□ 1.43
CXCL12P48061 QDPR-206ENST00000508623 601 ntTSL 3 BASIC24■■□□□ 1.43
CXCL12P48061 AL512631.2-201ENST00000604634 923 ntBASIC24■■□□□ 1.43
CXCL12P48061 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
CXCL12P48061 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24■■□□□ 1.43
CXCL12P48061 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CXCL12P48061 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
CXCL12P48061 AC142472.1-201ENST00000612013 1741 ntBASIC23.99■■□□□ 1.43
CXCL12P48061 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CXCL12P48061 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CXCL12P48061 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.99■■□□□ 1.43
CXCL12P48061 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CXCL12P48061 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.99■■□□□ 1.43
CXCL12P48061 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.99■■□□□ 1.43
CXCL12P48061 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
CXCL12P48061 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CXCL12P48061 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CXCL12P48061 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.98■■□□□ 1.43
CXCL12P48061 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CXCL12P48061 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CXCL12P48061 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CXCL12P48061 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CXCL12P48061 GUK1-205ENST00000366722 850 ntTSL 3 BASIC23.97■■□□□ 1.43
CXCL12P48061 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CXCL12P48061 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CXCL12P48061 LINC01003-201ENST00000564834 1764 ntBASIC23.97■■□□□ 1.43
CXCL12P48061 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.97■■□□□ 1.43
CXCL12P48061 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CXCL12P48061 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CXCL12P48061 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC23.96■■□□□ 1.43
CXCL12P48061 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CXCL12P48061 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CXCL12P48061 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.94■■□□□ 1.42
CXCL12P48061 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CXCL12P48061 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC23.94■■□□□ 1.42
CXCL12P48061 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
CXCL12P48061 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CXCL12P48061 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.94■■□□□ 1.42
CXCL12P48061 PBX2P1-201ENST00000493219 1291 ntBASIC23.94■■□□□ 1.42
CXCL12P48061 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.94■■□□□ 1.42
CXCL12P48061 AC092666.2-201ENST00000613287 246 ntBASIC23.94■■□□□ 1.42
CXCL12P48061 AC106739.1-201ENST00000617035 715 ntBASIC23.94■■□□□ 1.42
CXCL12P48061 DRD5P2-201ENST00000421395 2012 ntBASIC23.94■■□□□ 1.42
CXCL12P48061 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CXCL12P48061 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CXCL12P48061 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.93■■□□□ 1.42
CXCL12P48061 ZNRF2P3-201ENST00000424200 374 ntBASIC23.93■■□□□ 1.42
CXCL12P48061 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
CXCL12P48061 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CXCL12P48061 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CXCL12P48061 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CXCL12P48061 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CXCL12P48061 AC142381.2-201ENST00000566120 298 ntBASIC23.92■■□□□ 1.42
CXCL12P48061 RARRES2P6-201ENST00000567333 442 ntBASIC23.92■■□□□ 1.42
CXCL12P48061 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.92■■□□□ 1.42
CXCL12P48061 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CXCL12P48061 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CXCL12P48061 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CXCL12P48061 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.91■■□□□ 1.42
CXCL12P48061 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.91■■□□□ 1.42
CXCL12P48061 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.91■■□□□ 1.42
CXCL12P48061 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CXCL12P48061 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CXCL12P48061 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
CXCL12P48061 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CXCL12P48061 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.9■■□□□ 1.42
CXCL12P48061 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.9■■□□□ 1.42
CXCL12P48061 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.9■■□□□ 1.42
CXCL12P48061 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.9■■□□□ 1.42
CXCL12P48061 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CXCL12P48061 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CXCL12P48061 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.89■■□□□ 1.41
CXCL12P48061 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CXCL12P48061 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
CXCL12P48061 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CXCL12P48061 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CXCL12P48061 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.88■■□□□ 1.41
CXCL12P48061 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CXCL12P48061 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
CXCL12P48061 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CXCL12P48061 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
CXCL12P48061 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.87■■□□□ 1.41
CXCL12P48061 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.87■■□□□ 1.41
CXCL12P48061 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.87■■□□□ 1.41
CXCL12P48061 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
CXCL12P48061 AF131216.4-201ENST00000638924 1588 ntBASIC23.86■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms