Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.11■□□□□ 0.65
CDX1P47902 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CDX1P47902 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CDX1P47902 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX1P47902 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX1P47902 RP9P-202ENST00000450133 1212 ntBASIC19.11■□□□□ 0.65
CDX1P47902 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CDX1P47902 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CDX1P47902 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CDX1P47902 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CDX1P47902 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC19.1■□□□□ 0.65
CDX1P47902 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CDX1P47902 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
CDX1P47902 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CDX1P47902 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDX1P47902 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX1P47902 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.09■□□□□ 0.65
CDX1P47902 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX1P47902 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.09■□□□□ 0.65
CDX1P47902 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX1P47902 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX1P47902 AC012354.3-201ENST00000623734 483 ntBASIC19.09■□□□□ 0.65
CDX1P47902 AL359504.2-201ENST00000605506 1601 ntBASIC19.09■□□□□ 0.65
CDX1P47902 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDX1P47902 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CDX1P47902 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.08■□□□□ 0.65
CDX1P47902 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDX1P47902 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.08■□□□□ 0.64
CDX1P47902 AC133552.2-201ENST00000619106 1032 ntBASIC19.08■□□□□ 0.64
CDX1P47902 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDX1P47902 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CDX1P47902 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.07■□□□□ 0.64
CDX1P47902 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.07■□□□□ 0.64
CDX1P47902 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDX1P47902 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 KRT18P60-201ENST00000312876 1297 ntBASIC19.06■□□□□ 0.64
CDX1P47902 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.06■□□□□ 0.64
CDX1P47902 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CDX1P47902 AC026202.3-201ENST00000600805 1127 ntBASIC19.06■□□□□ 0.64
CDX1P47902 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.06■□□□□ 0.64
CDX1P47902 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.06■□□□□ 0.64
CDX1P47902 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CDX1P47902 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CDX1P47902 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CDX1P47902 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CDX1P47902 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CDX1P47902 AC093536.1-201ENST00000569153 554 ntBASIC19.05■□□□□ 0.64
CDX1P47902 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 ERN1-208ENST00000606895 2068 ntBASIC19.05■□□□□ 0.64
CDX1P47902 AC009831.1-201ENST00000580420 1582 ntBASIC19.05■□□□□ 0.64
CDX1P47902 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CDX1P47902 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.04■□□□□ 0.64
CDX1P47902 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDX1P47902 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX1P47902 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX1P47902 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CDX1P47902 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CDX1P47902 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDX1P47902 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDX1P47902 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
CDX1P47902 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CDX1P47902 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CDX1P47902 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX1P47902 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CDX1P47902 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDX1P47902 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
CDX1P47902 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDX1P47902 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
CDX1P47902 DUSP8P4-201ENST00000399538 1761 ntBASIC19.01■□□□□ 0.63
CDX1P47902 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms