Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.79■■□□□ 1.88
PGK1P00558 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
PGK1P00558 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PGK1P00558 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.78■■□□□ 1.88
PGK1P00558 MIR3621-201ENST00000580529 85 ntBASIC26.78■■□□□ 1.88
PGK1P00558 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
PGK1P00558 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PGK1P00558 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.78■■□□□ 1.88
PGK1P00558 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.78■■□□□ 1.88
PGK1P00558 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
PGK1P00558 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PGK1P00558 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
PGK1P00558 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
PGK1P00558 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
PGK1P00558 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PGK1P00558 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
PGK1P00558 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.77■■□□□ 1.88
PGK1P00558 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.77■■□□□ 1.88
PGK1P00558 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.77■■□□□ 1.88
PGK1P00558 AC110285.6-201ENST00000617652 491 ntBASIC26.77■■□□□ 1.88
PGK1P00558 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
PGK1P00558 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
PGK1P00558 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.76■■□□□ 1.87
PGK1P00558 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.76■■□□□ 1.87
PGK1P00558 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
PGK1P00558 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.76■■□□□ 1.87
PGK1P00558 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PGK1P00558 MTDHP2-201ENST00000601468 714 ntBASIC26.76■■□□□ 1.87
PGK1P00558 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.76■■□□□ 1.87
PGK1P00558 MIR6724-1-201ENST00000616420 92 ntBASIC26.76■■□□□ 1.87
PGK1P00558 MIR6724-2-201ENST00000616483 92 ntBASIC26.76■■□□□ 1.87
PGK1P00558 MIR6724-4-201ENST00000617390 92 ntBASIC26.76■■□□□ 1.87
PGK1P00558 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.76■■□□□ 1.87
PGK1P00558 MIR6724-3-201ENST00000622482 92 ntBASIC26.76■■□□□ 1.87
PGK1P00558 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.75■■□□□ 1.87
PGK1P00558 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.75■■□□□ 1.87
PGK1P00558 AP004609.3-201ENST00000610705 1884 ntBASIC26.75■■□□□ 1.87
PGK1P00558 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC26.75■■□□□ 1.87
PGK1P00558 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PGK1P00558 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PGK1P00558 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
PGK1P00558 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PGK1P00558 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC26.74■■□□□ 1.87
PGK1P00558 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PGK1P00558 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.73■■□□□ 1.87
PGK1P00558 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.73■■□□□ 1.87
PGK1P00558 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
PGK1P00558 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PGK1P00558 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PGK1P00558 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PGK1P00558 MIR4466-201ENST00000606121 54 ntBASIC26.72■■□□□ 1.87
PGK1P00558 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.72■■□□□ 1.87
PGK1P00558 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PGK1P00558 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.71■■□□□ 1.87
PGK1P00558 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PGK1P00558 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.71■■□□□ 1.87
PGK1P00558 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PGK1P00558 AC096631.2-201ENST00000436136 790 ntBASIC26.71■■□□□ 1.87
PGK1P00558 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.71■■□□□ 1.87
PGK1P00558 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.71■■□□□ 1.87
PGK1P00558 AL356740.2-201ENST00000601559 647 ntBASIC26.71■■□□□ 1.87
PGK1P00558 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
PGK1P00558 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.71■■□□□ 1.87
PGK1P00558 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PGK1P00558 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.7■■□□□ 1.86
PGK1P00558 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
PGK1P00558 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PGK1P00558 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PGK1P00558 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PGK1P00558 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PGK1P00558 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.69■■□□□ 1.86
PGK1P00558 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.69■■□□□ 1.86
PGK1P00558 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.69■■□□□ 1.86
PGK1P00558 AC005837.3-201ENST00000612163 286 ntBASIC26.69■■□□□ 1.86
PGK1P00558 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
PGK1P00558 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
PGK1P00558 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.68■■□□□ 1.86
PGK1P00558 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.68■■□□□ 1.86
PGK1P00558 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.68■■□□□ 1.86
PGK1P00558 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PGK1P00558 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PGK1P00558 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.67■■□□□ 1.86
PGK1P00558 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PGK1P00558 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.67■■□□□ 1.86
PGK1P00558 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PGK1P00558 AC011551.1-201ENST00000614101 683 ntBASIC26.67■■□□□ 1.86
PGK1P00558 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.67■■□□□ 1.86
PGK1P00558 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
PGK1P00558 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
PGK1P00558 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.65■■□□□ 1.86
PGK1P00558 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC26.65■■□□□ 1.86
PGK1P00558 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PGK1P00558 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PGK1P00558 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PGK1P00558 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.64■■□□□ 1.86
PGK1P00558 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PGK1P00558 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PGK1P00558 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.64■■□□□ 1.86
PGK1P00558 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.64■■□□□ 1.86
PGK1P00558 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.64■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms